MSA at BYU
Enhanced multiple sequence alignment (MSA) software at Brigham Young University, Computer Science Department. This software uses hardware acceleration: GPU, FPGA, and Cell BE.
Topic
Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs
Detail
Operation: Multiple sequence alignment
Software interface: Command-line user interface
Language: C++
License: Public domain
Cost: Free
Version name: 3.8.31b
Credit: -
Input: FASTA
Output: -
Contact: Scott Lloyd ude.uyb@ttocsg | Quinn O Snell ude.uyb.sc@llens
Collection: -
Maturity: -
Publications
- Accelerated large-scale multiple sequence alignment.
- Lloyd S and Snell QO. Accelerated large-scale multiple sequence alignment. Accelerated large-scale multiple sequence alignment. 2011; 12:466. doi: 10.1186/1471-2105-12-466
- https://doi.org/10.1186/1471-2105-12-466
- PMID: 22151470
- PMC: -
Download and documentation
Source: http://dna.cs.byu.edu/msa/
Documentation: http://dna.cs.byu.edu/msa/
Home page: http://dna.cs.byu.edu/msa/
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